PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G216400.1
Common NameB456_006G216400, LOC105800308
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 273aa    MW: 29536.7 Da    PI: 6.7357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G216400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000197698123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Gorai.006G216400.1 76 YSCSFCRREFRSAQALGGHMNVH 98
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-673103No hitNo description
SMARTSM003550.00987698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.21976103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAAELDLLSL TQLQKLAQSQ QNHNHHQLDT NLATVGSLMW YPKGQSHEVD DDSWEVRAFA  60
EDTGNVMGTT WPPRSYSCSF CRREFRSAQA LGGHMNVHRR DRARLHQAHP AAAGNGALNN  120
PTSPSSPSTT SSSTLLIPTQ EFVTNGGLCL LYQLHNPSDG VLTSSPPMDA WPIDSSSTLL  180
SVSPYPSYNL MAVTAATQSP INFPATPPML NSSSSSSSSS SSSFCYSTKA VHSRTRGDNN  240
NLNQGLNISN KEIPLEELDL ELRLGHKRPT TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-137198229superman protein
2l1o_A3e-137198229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935261e-118GQ393526.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0491 SSR marker CGR5518 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486799.10.0PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0D2NWI30.0A0A0D2NWI3_G
STRINGPOPTR_0003s09000.13e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-36C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]